Comments on: BIDS Tutorial Series: Introductory Walkthrough https://reproducibility.stanford.edu/bids-tutorial-series-part-1a/?utm_source=rss&utm_medium=rss&utm_campaign=bids-tutorial-series-part-1a Fri, 01 Apr 2022 15:55:25 +0000 hourly 1 https://wordpress.org/?v=6.7.1 By: Anonymous https://reproducibility.stanford.edu/bids-tutorial-series-part-1a/#comment-33187 Fri, 01 Apr 2022 15:55:25 +0000 http://reproducibility.stanford.edu/?p=335#comment-33187 Hi, all

I fixed the problem above

Best,
Wenjun

]]> By: Anonymous https://reproducibility.stanford.edu/bids-tutorial-series-part-1a/#comment-33181 Fri, 01 Apr 2022 12:23:25 +0000 http://reproducibility.stanford.edu/?p=335#comment-33181 Hi, all
Thank you for the tutorial! I wonder if I get a longitudinal structral MRI data(and I just have structral MRI data without dwi or fmri data), how should I organized? treat the second longitudinal structral MRI data as another subject? (I have put my second longitudinal structral MRI into ses-2 folder, but got an error)

please give me some advice!
Many thanks!
Best,
Wenjun

]]> By: Franklin Feingold https://reproducibility.stanford.edu/bids-tutorial-series-part-1a/#comment-22837 Fri, 26 Mar 2021 21:39:33 +0000 http://reproducibility.stanford.edu/?p=335#comment-22837 Hi Donna,

I apologize for my very delayed reply. If you may you please direct questions over to NeuroStars (https://neurostars.org/tag/bids) with the “bids” tag. That is an active platform for supporting the community adopting BIDS.

Thank you,
Franklin

]]> By: Donna Gift Cabalo https://reproducibility.stanford.edu/bids-tutorial-series-part-1a/#comment-18821 Thu, 19 Nov 2020 13:09:09 +0000 http://reproducibility.stanford.edu/?p=335#comment-18821 Hello.

Thanks for the tutorial! I have T1 and resting state fmri dataset (just one session) that I am attempting to convert. While my anat folder is a valid data set, I am getting an error the following error on the func folder:
Error 1: [Code 50] TASK_NAME_MUST_DEFINE
Click here for more information about this issue
I renamed the converted files like the following and transferred them inside the func folder but to no avail.
sub-275679_task-rest_bold.nii
sub-275679_task-rest_bold.json
What could be causing this?

]]> By: Franklin Feingold https://reproducibility.stanford.edu/bids-tutorial-series-part-1a/#comment-16481 Thu, 20 Aug 2020 21:20:00 +0000 http://reproducibility.stanford.edu/?p=335#comment-16481 Hi Ryan,

Thanks for the message and suggestion. Unfortunately, we do not have plans to redo this tutorial.

Also, thanks for catching our `conversation` rather than `conversion`. I have updated the text to reflect this.

Thank you,
Franklin

]]> By: Ryan https://reproducibility.stanford.edu/bids-tutorial-series-part-1a/#comment-16298 Thu, 13 Aug 2020 20:22:33 +0000 http://reproducibility.stanford.edu/?p=335#comment-16298 Hi,

Thanks for creating this tutorial. I registered for NITRC and requested access to the 1000 Functional Connectomes Project. The FAQ says that the request can take ~1 day to go through. Would it be possible to update the tutorial with a public dataset that can be accessed more easily?

Thank you,
Ryan

PS I think the word “conversation” should be “conversion” throughout the text.

]]> By: Franklin Feingold https://reproducibility.stanford.edu/bids-tutorial-series-part-1a/#comment-11923 Fri, 17 Jan 2020 23:39:27 +0000 http://reproducibility.stanford.edu/?p=335#comment-11923 Hi Jing,
thank you for raising this! I have updated the links.
Thank you,
Franklin

]]> By: Jing https://reproducibility.stanford.edu/bids-tutorial-series-part-1a/#comment-11412 Tue, 24 Dec 2019 13:24:22 +0000 http://reproducibility.stanford.edu/?p=335#comment-11412 many links are dead

]]> By: Jing https://reproducibility.stanford.edu/bids-tutorial-series-part-1a/#comment-11407 Tue, 24 Dec 2019 09:02:56 +0000 http://reproducibility.stanford.edu/?p=335#comment-11407 Step 6 the link for “naming anatomical images” is dead

]]> By: Franklin Feingold https://reproducibility.stanford.edu/bids-tutorial-series-part-1a/#comment-7704 Tue, 28 May 2019 20:59:15 +0000 http://reproducibility.stanford.edu/?p=335#comment-7704 Hi Elian,
Thank you for your message. This is an interesting error, it appears that the spelling (according to the latest stable specification: https://bids-specification.readthedocs.io/en/stable/03-modality-agnostic-files.html#dataset_descriptionjson) is “BIDSVersion”. If this persists, can you please open an issue on our validator – https://github.com/bids-standard/bids-validator/issues. For the txt to tsv conversion, I have listed how I did this in the next tutorial – http://reproducibility.stanford.edu/bids-tutorial-series-part-1b/#auto10. This conversion is specific to this set.

Hi Rishi,
May you please confirm you have created an account with both NITRC and 1000 Functional Connectomes Project? (http://fcon_1000.projects.nitrc.org/indi/req_access.html) In addition to being signed into NITRC when trying to download?

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